PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0141s0042.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 417aa    MW: 45963.7 Da    PI: 6.0146
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0141s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.27.5e-25157222171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++ ++++ ++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn++rwkg
  Kalax.0141s0042.1.p 157 RYDSSLGLLTKKFINLIQGTKDRPLDLNYSAQVL---QV--QKRRIYDITNVLEGIGLIEKTSKNHVRWKG 222
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-26155223IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-16157220IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-30157222IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-22159222IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146606.83E-32233340No hitNo description
SuperFamilySSF1440741.96E-25234339No hitNo description
PfamPF164217.4E-24238338IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSSPISGERR PLPIPPPPQP SRFHYQALCP NQLPADAVKS APALPSPQLF HSDSRSPDSN  60
RKLTETSMNP VAISVGSRAG DGPCSVSDAR RFSTNHESHV AGYGGSNDRR PASNGPSVKP  120
DRSPPNKDQS KIKASKNTKN GNLKSENDYL NSAVSCRYDS SLGLLTKKFI NLIQGTKDRP  180
LDLNYSAQVL QVQKRRIYDI TNVLEGIGLI EKTSKNHVRW KGSNIMGEMD LDDEITMLKA  240
EMEHLCAMEC RLDARIREKQ ELLRAIDEDE NYNKYLFLTE NDITSLPCFQ NQTLVVVKAP  300
PASMVEVPDP DVQDFSGQQR QYRMIIRSTR GPIDLYLLSK VNGVPECVSV ESAQPMDASV  360
MDASSKKTEC AKQSSSSELP GITKIVPVES QSDDDYWFCS DPGISITDLW DTNGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-20157222773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664799.11e-113PREDICTED: transcription factor E2FC isoform X1
RefseqXP_010664800.11e-113PREDICTED: transcription factor E2FC isoform X2
SwissprotQ9FV705e-92E2FC_ARATH; Transcription factor E2FC
TrEMBLF6H0801e-113F6H080_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g14110.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.24e-93E2F/DP family protein